Causes and consequences of fine-scale breeding dispersal in a female-philopatric species

The potentially confounded effects of factors affecting breeding dispersal have rarely been simultaneously examined. The consequences of breeding dispersal are even less studied, presenting a paradox: breeding dispersal seldom seems to improve breeding success, despite its presumed adaptiveness. We studied the causes and consequences of breeding dispersal in female-philopatric eiders (Somateria mollissima) in relation to the spatiotemporal predictability of nest success. Previous nest fate, breeding experience, and breeding density simultaneously affected breeding dispersal. Dispersal distances were longer among inexperienced breeders and after failed breeding. Individual dispersal distances decreased with increasing nest-site-specific breeding density, whereas island-specific nesting success peaked at intermediate densities. The fate of neighbouring nests (‘public information’) did not influence dispersal. Breeding dispersal was unrelated to subsequent hatching success, controlling for individual quality (body condition, breeding experience, previous nest fate), while it delayed hatch date, which is likely to impair reproductive success. This delay may result from the loss of acquired information of local breeding conditions, prolonging nest prospecting and establishment, also helping explain why breeding dispersal did not increase at high breeding densities, despite a potential reduction in nesting success. In long-lived species, however, dispersal-induced reductions in reproductive output in one season could be offset by improved parental survival prospects. Careful nest prospecting may be profitable, because overall nest success had a strong island-specific component but showed weak temporal variation, and successive individual nest fates were predictable between years. Once a safe nest site is found, females may breed at the same place successfully for many years.     

Optimized detection of transcription factor-binding sites in ChIP-seq experiments

We developed a computational procedure for optimizing the binding site detections in a given ChIP-seq experiment by maximizing their reproducibility under bootstrap sampling. We demonstrate how the procedure can improve the detection accuracies beyond those obtained with the default settings of popular peak calling software, or inform the user whether the peak detection results are compromised, circumventing the need for arbitrary re-iterative peak calling under varying parameter settings. The generic, open-source implementation is easily extendable to accommodate additional features and to promote its widespread application in future ChIP-seq studies. The peakROTS R-package and user guide are freely available at http://www.nic.funet.fi/pub/sci/molbio/peakROTS.     

Differences in shifts of wintering and breeding ranges lead to changing migration distances in European birds

Studies on the impact of climate change on the distributions of bird species in Europe have largely focused on one season at a time, especially concerning summer breeding ranges. We investigated whether migratory bird species show consistent range shifts over the past 55 yr in both breeding and wintering areas or if these shifts are independent. We then analyzed whether patterns in changing migration distances of Finnish breeding birds could be explained by habitat use, phylogeny or body size. We used long‐term datasets from the Finnish ringing centre to analyze the mean wintering latitudes of 29 species of Finnish breeding birds, then used breeding distribution data to make predictions as to whether certain species were migrating shorter or longer distances based on the comparative shifts in the wintering and breeding grounds. Our data reveal species‐specific differences in changing migration distances. We show that for many species, long‐term shifts in wintering ranges have not followed the same patterns as those in the breeding range, leading to differences in migration distances over time. We conclude that species are not adjusting predictably to climate change in their wintering grounds, leading to changing migration distances in some, but not all, species breeding in Finland. This research fills an important gap in the current climate change biology literature, focusing on individuals’ entire life histories and revealing new complexities in range shift patterns.     

Climatic responses in spring migration of boreal and arctic birds in relation to wintering area and taxonomy

Large‐scale climate fluctuations, such as the North Atlantic Oscillation (NAO), have a marked effect on the timing of spring migration of birds. It has however been suggested that long‐distance migrants wintering in Africa could respond less to NAO than short‐distance migrants wintering in Europe, making them more vulnerable to climatic changes. We studied whether migratory boreal and arctic bird species returning from different wintering areas show differences in responses to the NAO in the timing of their spring migration. We used data on 75 species from two bird observatories in northern Europe (60°N). By extending the examination to the whole distribution of spring migration and to a taxonomically diverse set of birds, we aimed at finding general patterns of the effects of climate fluctuation on the timing of avian migration. Most species arrived earlier after winters with high NAO index. The degree of NAO‐response diminished with the phase of migration: the early part of a species’ migratory population responded more strongly than the later part. Early phase waterfowl responded strongest to NAO, but in later phases their response faded to non‐significant. This pattern may be related to winter severity and/or ice conditions in the Baltic. In the two other groups, gulls and waders and passerines, all phases of migration responded to NAO and fading with phase was non‐significant. The difference between waterfowl and other groups may be related to differences between the phenological development of their respective macrohabitats. Wintering area affected the strength of NAO response in a complicated way. On average medium distance migrants responded most strongly, followed by short‐distance migrants and partial migrants. Our results concerning the response of long‐distance migrants were difficult to interpret: there is an overall weak yet statistically significant effect, but patterns with phase of migration need further study. Our results highlight the importance of examining the whole distribution of migration and warrant the use of data sets from several sampling sites when studying climatic effects on the timing of avian life‐history events.     

Evaluation of the phosphorescent palladium(II)-coproporphyrin labels in separation-free hybridization assays

Palladium(II)-coproporphyrin label and a set of corresponding monofunctional labeling reagents with different linker arms were evaluated for labeling of oligonucleotides and subsequent use in hybridization assays. The properties of resulting oligonucleotide probes including phosphorescence spectra, quantum yields, lifetimes, and labeling yields were examined as functions of the label and oligonucleotide structures. Upon hybridization with complementary sequences bearing dabcyl, QSY-7, and rhodamine green dyes, the probes displayed strong quenching due to close proximity effects. Intensity and lifetime changes of the phosphorescence, distance, and temperature dependences were investigated in detail. The potential of the new label and probes for sensitive and separation-free hybridization assays was discussed.     

Impacts of trichomonosis epidemics on Greenfinch Chloris chloris and Chaffinch Fringilla coelebs populations in Finland

Population consequences of parasites in wild birds are rarely documented. One exception is the decline of British finch populations due to an epidemic caused by the protozoan parasite Trichomonas gallinae. Finch trichomonosis has recently spread from the UK to northern Europe, but its consequences for local finch populations have not been studied. We assessed the extent to which the trichomonosis epidemic affected the Finnish population sizes of European Greenfinch Chloris chloris, Common Chaffinch Fringilla coelebs and a control species, Great Tit Parus major, and the body condition of Greenfinches. The disease was first documented in Finland in 2008 and epidemics were observed mainly in southwestern Finland. Greenfinches showed a significant decline of 47% in breeding numbers and 65% in wintering numbers in southern Finland during 2006–2010. Breeding Chaffinch numbers showed a slight decline (4%) during the same study period that was significant only in central Finland. Great Tit did not show a significant change in breeding numbers. During the initial disease epidemic the body condition of all demographic groups of Greenfinches decreased equally, which suggests that the disease was not selective in respect of age or sex. There were no encounters of Finnish‐ringed Greenfinches or Chaffinches in the UK, which could indicate that the parasite has not necessarily been transferred directly from the UK, but perhaps by migrants from Sweden and Germany.     

Peritoneal mast cell degranulation differently affected thioglycollate-induced macrophage phenotype and activity in Dark Agouti and Albino Oxford rats

Aims

Macrophages are heterogeneous population of inflammatory cells and, in response to the microenvironment, become differentially activated. The objective of the study was to explore macrophage effector functions during different inflammatory conditions in two rat strains.

Main methods

We have investigated the effects of in vivo treatment with mast cell-degranulating compound 48/80 and/or thioglycollate on peritoneal macrophage phagocytosis and capacity to secrete hydrogen peroxide (H₂O₂), tumor necrosis factor-α (TNF-α) and nitric oxide (NO) in Dark Agouti (DA) and Albino Oxford (AO) rat strains. Besides, fresh peritoneal cells were examined for the expression of ED1, ED2 and CD86 molecules.

Key findings

In thioglycollate-elicited macrophages, increased proportion of ED1 + cells was accompanied with elevated phagocytosis of zymosan (DA strain), whereas increased expression level of CD86 molecule on ED2 + macrophages matched elevated secretory capacity for H₂O₂, TNF-α and NO (AO rats). Although mast cell degranulation induced by compound 48/80 increased the percentages of ED2 + macrophages in both rat strains, the proportion of ED2 + cells expressing CD86 molecule was decreased and increased in DA and AO rats, respectively. Furthermore, in DA strain compound 48/80 diminished macrophage secretion of NO, but stimulated all macrophage functions tested in AO strain. If applied concomitantly, the compound 48/80 additively increased macrophage activity induced by thioglycollate in AO rats.

Significance

Macrophages from DA and AO rat strains show different susceptibility to mediators released from mast cells, suggesting that strain-dependant predisposition(s) toward particular activation pattern is decisive for the macrophage efficacy in response to inflammatory agents.     

The effects of hatching date on timing of autumn migration in partial migrants – an individual approach

Timing of spring migration and breeding and their interaction with climate change has been widely studied in recent years, but the possible changes in timing of autumn migration have gained less attention. This work focuses on autumn migration and provides the first multi‐species individual‐based study of how hatching date affects the autumn migration date and migration age by using nestling ring data and re‐trappings of the same individuals during the autumn migration at the Hanko Bird Observatory, Finland. We studied three potentially multibrooded passerines (great tit, blue tit and coal tit) and two single‐brooded birds of prey (goshawk, sparrowhawk), all partially migratory short‐distance migrants. Individuals from late broods migrated at a younger age in all tit species and also in hawks the late hatched individuals tended to migrate at a younger age than the early‐hatched individuals. Late‐hatched individuals migrated later than early‐hatched individuals in blue and coal tits, where the latest hatchers represented second brood individuals. Based on our results, the time from hatching to autumn migration is not constant even among individuals of the same population. Our study indicates that climate warming induced advancement of avian breeding may cause changes in the timing of autumn migration through the frequency of second broods.     

Patterns of climate‐induced density shifts of species: poleward shifts faster in northern boreal birds than in southern birds

Climate change has been shown to cause poleward range shifts of species. These shifts are typically demonstrated using presence–absence data, which can mask the potential changes in the abundance of species. Moreover, changes in the mean centre of weighted density of species are seldom examined, and comparisons between these two methods are even rarer. Here, we studied the change in the mean weighted latitude of density (MWLD) of 94 bird species in Finland, northern Europe, using data covering a north–south gradient of over 1000 km from the 1970s to the 2010s. The MWLD shifted northward on average 1.26 km yr^?1, and this shift was significantly stronger in northern species compared to southern species. These shifts can be related to climate warming during the study period, because the annual temperature had increased more in northern Finland (by 1.7 °C) than in southern Finland (by 1.4 °C), although direct causal links cannot be shown. Density shifts of species distributed over the whole country did not differ from shifts in species situated on the edge of the species range in southern and northern species. This means that density shifts occur both in the core and on the edge of species distribution. The species‐specific comparison of MWLD values with corresponding changes in the mean weighted latitude using presence–absence atlas data (MWL) revealed that the MWLD moved more slowly than the MWL in the atlas data in the southern species examined, but more rapidly in the northern species. Our findings highlight that population densities are also moving rapidly towards the poles and the use of presence–absence data can mask the shift of population densities. We encourage use of abundance data in studies considering the effects of climate change on biodiversity.